10 actions in 2 pieces of software · ranked by words, meaning and measured trust · 639 ms

1. 1bio-pathway-wikipathwaysverified and signedpassport

   skillGPTomics/bioSkillsrecord

   • bio-pathway-wikipathways

     WikiPathways enrichment using clusterProfiler and rWikiPathways. Use when analyzing gene lists against community-curated open-source pathways. Performs over-representation analysis and GSEA for 30+ species.

2. 2WikiPathways Webservicesverified and signedpassport

   APIrecord

   • GET /getPathway

     getPathway

   • GET /getPathwayInfo

     getPathwayInfoGet some general info about the pathway, such as the name, species, without downloading the GPML.

   • GET /findPathwaysByXref

     findPathwaysByXref

   • GET /getPathwaysByOntologyTerm

     getPathwaysByOntologyTerm

   • GET /listPathways

     listPathways

   • GET /findPathwaysByLiterature

     findPathwaysByLiterature

   • GET /getPathwayAs

     getPathwayAsDownload a pathway in the specified file format.

   • GET /findPathwaysByText

     findPathwaysByText

   • GET /getPathwaysByParentOntologyTerm

     getPathwaysByParentOntologyTerm