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scanpy

Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or SingleCellExperiment RDS conversion to h5ad. Applies to estab

skill:k-dense-ai/scientific-agent-skills/scanpy · published by k-dense-ai · source repository